R (and SAS) program files for Directed Studies Course VHM 882 at AVC - Winter Semester 2005

This page contains links to R programs (as textfiles, to be opened in Notepad or another editor/wordprocesser) of selected examples and exercises of the course. The files have been compiled by the Biostats 882 course instructor, Henrik Stryhn.

Davis (2002), Statistical Methods for the Analysis of Repeated Measurements

• Chapter 2: Example 2.1 (Table 2.1), Example 2.3 (Table 2.5), Example 2.4 (Table 2.7), Exercise 2.3, Exercise 2.4, Exercise 2.13,
• Chapter 3: Example 3.1 (Table 2.1), Example 3.2 (Table 3.1), Example 3.3 (Table 3.3), Exercise 3.6, Exercise 3.9, Exercise 3.11,
• Chapter 4: Example 4.1 (Table 3.3), Example 4.2 (Table 3.1), Example 4.3 (Table 3.3), Exercise 4.3, Exercise 4.8, Exercise 4.11,
• Chapter 5: Example 5.1 (Table 3.3), Example 5.2 (Table 5.4), Additional example (Table 3.3), Exercise 5.4, Exercise 5.9,
• Chapter 6: Example 6.1 (Table 3.3), Example 6.2 (Table 6.3) (SAS-code), Example 6.3 (Table 6.6) (SAS-code), Exercise 6.2, Exercise 6.7,
• Chapter 9: Example 9.1 (Table 9.1), Exercise 9.5, Exercise 9.7, Exercise 9.11, Exercise 9.12,

Pinheiro and Bates (2000), Mixed-Effects Models in S and S-Plus

• Chapter 1: All examples,
• Chapter 2: Section 2.4 examples,
• Chapter 4: All examples,
• Chapter 5: All examples, Exercise 5.1, Exercise 5.2,

Extra examples

• SCC example (Dohoo et al., 2003): SAS,
• 2x2 cross-over (Diggle et al., 2002): R, SAS
• 3x3 cross-over (Diggle et al., 2002): R, SAS
• cd4 seizure counts (Diggle et al., 2002): R, SAS
• Indonesian children (Diggle et al., 2002): R,
• Cow milk protein contents (Diggle et al., 2002): R,

Additional exercises

• Session 2: 2.1, 2.2
• Session 7: 7.1,
• Home assignments: 1,
• Session 12: 12.1,